Index

A

alternative (EFJC attribute), [1] asymptotic (EFJC attribute), [1] (FJC attribute) (LENNARDJONESFJC attribute), [1] (LOGSQUAREDFJC attribute), [1] (MORSEFJC attribute), [1]

E

EFJC (class in polymers.physics.single_chain.efjc) (class in polymers.physics.single_chain.efjc.thermodynamics) (class in polymers.physics.single_chain.efjc.thermodynamics.isometric) (class in polymers.physics.single_chain.efjc.thermodynamics.isometric.asymptotic) (class in polymers.physics.single_chain.efjc.thermodynamics.isometric.asymptotic.alternative) (class in polymers.physics.single_chain.efjc.thermodynamics.isometric.asymptotic.alternative.legendre) (class in polymers.physics.single_chain.efjc.thermodynamics.isometric.asymptotic.legendre) (class in polymers.physics.single_chain.efjc.thermodynamics.isometric.asymptotic.reduced) (class in polymers.physics.single_chain.efjc.thermodynamics.isometric.asymptotic.reduced.legendre) (class in polymers.physics.single_chain.efjc.thermodynamics.isotensional) (class in polymers.physics.single_chain.efjc.thermodynamics.isotensional.asymptotic) (class in polymers.physics.single_chain.efjc.thermodynamics.isotensional.asymptotic.alternative) (class in polymers.physics.single_chain.efjc.thermodynamics.isotensional.asymptotic.alternative.legendre) (class in polymers.physics.single_chain.efjc.thermodynamics.isotensional.asymptotic.legendre) (class in polymers.physics.single_chain.efjc.thermodynamics.isotensional.asymptotic.reduced) (class in polymers.physics.single_chain.efjc.thermodynamics.isotensional.asymptotic.reduced.legendre) (class in polymers.physics.single_chain.efjc.thermodynamics.isotensional.legendre) end_to_end_length() (EFJC method), [1], [2], [3] (FJC method), [1], [2] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method)

end_to_end_length_per_link() (EFJC method), [1], [2], [3] (FJC method), [1], [2] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method) equilibrium_distribution() (FJC method), [1] (Ideal method) (SWFJC method) (WLC method) equilibrium_radial_distribution() (FJC method), [1] (Ideal method) (SWFJC method) (WLC method)

F

FJC (class in polymers.physics.single_chain.fjc) (class in polymers.physics.single_chain.fjc.thermodynamics) (class in polymers.physics.single_chain.fjc.thermodynamics.isometric) (class in polymers.physics.single_chain.fjc.thermodynamics.isometric.legendre) (class in polymers.physics.single_chain.fjc.thermodynamics.isotensional) (class in polymers.physics.single_chain.fjc.thermodynamics.isotensional.legendre) (class in polymers.physics.single_chain.fjc.thermodynamics.modified_canonical) (class in polymers.physics.single_chain.fjc.thermodynamics.modified_canonical.asymptotic) (class in polymers.physics.single_chain.fjc.thermodynamics.modified_canonical.asymptotic.strong_potential) (class in polymers.physics.single_chain.fjc.thermodynamics.modified_canonical.asymptotic.weak_potential)

force() (EFJC method), [1], [2] (FJC method), [1], [2], [3], [4] (Ideal method) (LENNARDJONESFJC method), [1] (LOGSQUAREDFJC method), [1] (MORSEFJC method), [1] (SWFJC method) (WLC method)

G

gibbs_free_energy() (EFJC method), [1], [2], [3] (FJC method), [1], [2], [3] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method), [1]

gibbs_free_energy_per_link() (EFJC method), [1], [2], [3] (FJC method), [1], [2], [3] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method), [1]

H

helmholtz_free_energy() (EFJC method), [1], [2], [3], [4], [5], [6] (FJC method), [1], [2], [3], [4] (Ideal method) (LENNARDJONESFJC method), [1], [2], [3], [4] (LOGSQUAREDFJC method), [1], [2], [3], [4] (MORSEFJC method), [1], [2], [3], [4] (SWFJC method), [1] (WLC method), [1] helmholtz_free_energy_per_link() (EFJC method), [1], [2], [3], [4], [5], [6] (FJC method), [1], [2], [3], [4] (Ideal method) (LENNARDJONESFJC method), [1], [2], [3], [4] (LOGSQUAREDFJC method), [1], [2], [3], [4] (MORSEFJC method), [1], [2], [3], [4] (SWFJC method), [1] (WLC method), [1]

hinge_mass (EFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16] (FJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (Ideal attribute), [1], [2], [3] (LENNARDJONESFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (LOGSQUAREDFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (MORSEFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (SWFJC attribute), [1], [2], [3], [4], [5] (WLC attribute), [1], [2], [3], [4], [5]

I

Ideal (class in polymers.physics.single_chain.ideal) (class in polymers.physics.single_chain.ideal.thermodynamics) (class in polymers.physics.single_chain.ideal.thermodynamics.isometric) (class in polymers.physics.single_chain.ideal.thermodynamics.isotensional) isometric (EFJC attribute) (FJC attribute) (Ideal attribute) (LENNARDJONESFJC attribute) (LOGSQUAREDFJC attribute) (MORSEFJC attribute) (SWFJC attribute) (WLC attribute)

isotensional (EFJC attribute) (FJC attribute) (Ideal attribute) (LENNARDJONESFJC attribute) (LOGSQUAREDFJC attribute) (MORSEFJC attribute) (SWFJC attribute) (WLC attribute)

L

legendre (EFJC attribute), [1], [2], [3], [4], [5], [6] (FJC attribute), [1] (LENNARDJONESFJC attribute), [1], [2], [3], [4] (LOGSQUAREDFJC attribute), [1], [2], [3], [4] (MORSEFJC attribute), [1], [2], [3], [4] (SWFJC attribute), [1] (WLC attribute), [1] LENNARDJONESFJC (class in polymers.physics.single_chain.ufjc.lennard_jones) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isometric) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isometric.asymptotic) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isometric.asymptotic.legendre) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isometric.asymptotic.reduced) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isometric.asymptotic.reduced.legendre) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isotensional) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isotensional.asymptotic) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isotensional.asymptotic.legendre) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isotensional.asymptotic.reduced) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isotensional.asymptotic.reduced.legendre) (class in polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isotensional.legendre) link_energy (MORSEFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] link_length (EFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16] (FJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (Ideal attribute), [1], [2], [3] (LENNARDJONESFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (LOGSQUAREDFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (MORSEFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (SWFJC attribute), [1], [2], [3], [4], [5] (WLC attribute), [1], [2], [3], [4], [5]

link_stiffness (EFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16] (LENNARDJONESFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (LOGSQUAREDFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (MORSEFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] LOGSQUAREDFJC (class in polymers.physics.single_chain.ufjc.log_squared) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isometric) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isometric.asymptotic) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isometric.asymptotic.legendre) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isometric.asymptotic.reduced) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isometric.asymptotic.reduced.legendre) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isotensional) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isotensional.asymptotic) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isotensional.asymptotic.legendre) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isotensional.asymptotic.reduced) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isotensional.asymptotic.reduced.legendre) (class in polymers.physics.single_chain.ufjc.log_squared.thermodynamics.isotensional.legendre)

M

modified_canonical (FJC attribute) module polymers.physics.single_chain, [1] polymers.physics.single_chain.ufjc MORSEFJC (class in polymers.physics.single_chain.ufjc.morse) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isometric) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isometric.asymptotic) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isometric.asymptotic.legendre) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isometric.asymptotic.reduced) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isometric.asymptotic.reduced.legendre) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isotensional) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isotensional.asymptotic) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isotensional.asymptotic.legendre) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isotensional.asymptotic.reduced) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isotensional.asymptotic.reduced.legendre) (class in polymers.physics.single_chain.ufjc.morse.thermodynamics.isotensional.legendre)

N

nondimensional_end_to_end_length() (EFJC method), [1], [2], [3] (FJC method), [1], [2] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method) nondimensional_end_to_end_length_per_link() (EFJC method), [1], [2], [3] (FJC method), [1], [2] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method) nondimensional_equilibrium_distribution() (FJC method), [1] (Ideal method) (SWFJC method) (WLC method) nondimensional_equilibrium_radial_distribution() (FJC method), [1] (Ideal method) (SWFJC method) (WLC method) nondimensional_force() (EFJC method), [1], [2] (FJC method), [1], [2], [3], [4] (Ideal method) (LENNARDJONESFJC method), [1] (LOGSQUAREDFJC method), [1] (MORSEFJC method), [1] (SWFJC method) (WLC method) nondimensional_gibbs_free_energy() (EFJC method), [1], [2], [3] (FJC method), [1], [2], [3] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method), [1] nondimensional_gibbs_free_energy_per_link() (EFJC method), [1], [2], [3] (FJC method), [1], [2], [3] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method), [1] nondimensional_helmholtz_free_energy() (EFJC method), [1], [2], [3], [4], [5], [6] (FJC method), [1], [2], [3], [4] (Ideal method) (LENNARDJONESFJC method), [1], [2], [3], [4] (LOGSQUAREDFJC method), [1], [2], [3], [4] (MORSEFJC method), [1], [2], [3], [4] (SWFJC method), [1] (WLC method), [1]

nondimensional_helmholtz_free_energy_per_link() (EFJC method), [1], [2], [3], [4], [5], [6] (FJC method), [1], [2], [3], [4] (Ideal method) (LENNARDJONESFJC method), [1], [2], [3], [4] (LOGSQUAREDFJC method), [1], [2], [3], [4] (MORSEFJC method), [1], [2], [3], [4] (SWFJC method), [1] (WLC method), [1] nondimensional_relative_gibbs_free_energy() (EFJC method), [1], [2], [3] (FJC method), [1], [2], [3] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method), [1] nondimensional_relative_gibbs_free_energy_per_link() (EFJC method), [1], [2], [3] (FJC method), [1], [2], [3] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method), [1] nondimensional_relative_helmholtz_free_energy() (EFJC method), [1], [2], [3], [4], [5], [6] (FJC method), [1], [2], [3], [4] (Ideal method) (LENNARDJONESFJC method), [1], [2], [3], [4] (LOGSQUAREDFJC method), [1], [2], [3], [4] (MORSEFJC method), [1], [2], [3], [4] (SWFJC method), [1] (WLC method), [1] nondimensional_relative_helmholtz_free_energy_per_link() (EFJC method), [1], [2], [3], [4], [5], [6] (FJC method), [1], [2], [3], [4] (Ideal method) (LENNARDJONESFJC method), [1], [2], [3], [4] (LOGSQUAREDFJC method), [1], [2], [3], [4] (MORSEFJC method), [1], [2], [3], [4] (SWFJC method), [1] (WLC method), [1] number_of_links (EFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16] (FJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (Ideal attribute), [1], [2], [3] (LENNARDJONESFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (LOGSQUAREDFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (MORSEFJC attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] (SWFJC attribute), [1], [2], [3], [4], [5] (WLC attribute), [1], [2], [3], [4], [5]

P

persistance_length (WLC attribute), [1], [2], [3], [4], [5] polymers.physics.single_chain module, [1]

polymers.physics.single_chain.ufjc module

R

reduced (EFJC attribute), [1] (LENNARDJONESFJC attribute), [1] (LOGSQUAREDFJC attribute), [1] (MORSEFJC attribute), [1] relative_gibbs_free_energy() (EFJC method), [1], [2], [3] (FJC method), [1], [2], [3] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method), [1] relative_gibbs_free_energy_per_link() (EFJC method), [1], [2], [3] (FJC method), [1], [2], [3] (Ideal method) (LENNARDJONESFJC method), [1], [2] (LOGSQUAREDFJC method), [1], [2] (MORSEFJC method), [1], [2] (SWFJC method) (WLC method), [1]

relative_helmholtz_free_energy() (EFJC method), [1], [2], [3], [4], [5], [6] (FJC method), [1], [2], [3], [4] (Ideal method) (LENNARDJONESFJC method), [1], [2], [3], [4] (LOGSQUAREDFJC method), [1], [2], [3], [4] (MORSEFJC method), [1], [2], [3], [4] (SWFJC method), [1] (WLC method), [1] relative_helmholtz_free_energy_per_link() (EFJC method), [1], [2], [3], [4], [5], [6] (FJC method), [1], [2], [3], [4] (Ideal method) (LENNARDJONESFJC method), [1], [2], [3], [4] (LOGSQUAREDFJC method), [1], [2], [3], [4] (MORSEFJC method), [1], [2], [3], [4] (SWFJC method), [1] (WLC method), [1]

S

strong_potential (FJC attribute) SWFJC (class in polymers.physics.single_chain.swfjc) (class in polymers.physics.single_chain.swfjc.thermodynamics) (class in polymers.physics.single_chain.swfjc.thermodynamics.isometric) (class in polymers.physics.single_chain.swfjc.thermodynamics.isometric.legendre) (class in polymers.physics.single_chain.swfjc.thermodynamics.isotensional) (class in polymers.physics.single_chain.swfjc.thermodynamics.isotensional.legendre)

T

thermodynamics (EFJC attribute) (FJC attribute) (Ideal attribute) (LENNARDJONESFJC attribute) (LOGSQUAREDFJC attribute) (MORSEFJC attribute) (SWFJC attribute) (WLC attribute)

W

weak_potential (FJC attribute) well_width (SWFJC attribute), [1], [2], [3], [4], [5] WLC (class in polymers.physics.single_chain.wlc) (class in polymers.physics.single_chain.wlc.thermodynamics) (class in polymers.physics.single_chain.wlc.thermodynamics.isometric) (class in polymers.physics.single_chain.wlc.thermodynamics.isometric.legendre) (class in polymers.physics.single_chain.wlc.thermodynamics.isotensional) (class in polymers.physics.single_chain.wlc.thermodynamics.isotensional.legendre)